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숫자 집합에서 집계 함수를 사용하려고합니다. 집계가 내가 원하는 함수를 계산 한 후에, 나는 csv 파일에 출력을 썼다. 그러나이 CSV 파일은 값 테이블과 카운트 테이블로 구성됩니다. 카운트 테이블을 제거하고 싶습니다. 총계의 짤막음과 전체 {STATS} 매뉴얼을 확인했습니다. 그러나 나를 위해 이것을하는 매개 변수를 찾을 수 없습니다.집계를 사용하고 값 열만 얻는 방법?
그래서 질문입니다. 집계에 내가 값 열만 있고 집계 값을 원하지 않는다는 것을 어떻게 알 수 있습니까?
집계 함수는 내가 쓴 :
sdint<-aggregate(assayData(object)$intensity[,sample],
by = list(assayData(object)$states[,sample]),
sd,
na.rm=TRUE)
데이터 난`는 사용 : Data
내가 원하는 출력 : 내가 가진
0.576778569
0.300184855
0.303007167
0.339285757
0.309673603
0.345517885
0.218438482
0.274175334
0.322680676
0.342179188
0.321930905
0.391558862
0.365504912
0.37906546
0.425801585
0.348280535
0.330063333
0.388093547
0.262649566
0.202235805
0.294549104
0.206346439
0.190531238
0.227790818
0.238224514
0.264646831
0.286682489
0.231069902
0.25936052
0.363558042
0.210798912
0.18124299
0.438063879
0.264264297
0.254382012
0.464863254
출력 :
을1 0.576778569
2 0.300184855
3 0.303007167
4 0.339285757
5 0.309673603
6 0.345517885
7 0.218438482
8 0.274175334
9 0.322680676
10 0.342179188
11 0.321930905
12 0.391558862
13 0.365504912
14 0.37906546
15 0.425801585
16 0.348280535
17 0.330063333
18 0.388093547
19 0.262649566
20 0.202235805
21 0.294549104
22 0.206346439
23 0.190531238
24 0.227790818
25 0.238224514
26 0.264646831
27 0.286682489
28 0.231069902
29 0.25936052
30 0.363558042
31 0.210798912
32 0.18124299
33 0.438063879
34 0.264264297
35 0.254382012
36 0.464863254
왼쪽의 숫자가 표시되지 않아야합니다! CSV 형식으로
마지막 데이터 :
SNP_NAME,x0,x1,y,pos.start,pos.end,chrom,count,copynumber,intensity,allele.B,Lair,uncertain,Count,StandardLairDev,Count,MAX Lair,StandardIntDev,sample_id
"rs2065525",0,0,0,1896162,3138455,1,11,2,0.855,0,0.425,FALSE,1,0.287467339786124,1,0.999191681792884,1,0.576778568588604,"00_11242T1"
"rs1694379",0,0,0,3138456,148286049,1,263,2,0.9825,0,0.4758,FALSE,2,0.25066539967999,2,0.999763634558257,2,0.300184854995405,"00_11242T1"
"rs2027432",0,0,0,148286050,122268329,1,204,2,1.1092,1,0.8893,FALSE,3,0.128285157028804,3,0.999780287813653,3,0.303007166704586,"00_11242T1"
"rs16747",0,0,0,122268330,121622963,2,475,2,1.0407,0,0.7684,FALSE,4,0.16048988360498,4,0.99988056078919,4,0.339285756513036,"00_11242T1"
"rs1490265",0,0,0,121622964,67491556,3,136,2,1.0775,1,0.8031,FALSE,5,0.139532962911464,5,0.998567181034836,5,0.309673602648317,"00_11242T1"
"rs1864668",0,0,0,67491557,99834810,3,262,2,1.0775,0,0.6657,FALSE,6,0.174074950555206,6,0.999664655449619,6,0.345517884636054,"00_11242T1"
"rs1363207",0,0,0,99834811,182678081,4,270,2,0.883,0,0.5592,FALSE,7,0.22676775183123,7,0.999303463143844,7,0.218438481623468,"00_11242T1"
"rs1915853",0,0,0,182678082,96069863,4,26,2,0.6829,0,0.7207,FALSE,8,0.147755391322562,8,0.999377450758501,8,0.274175334131741,"00_11242T1"
"rs40207",0,0,0,96069864,57625291,5,98,2,1.0482,0,0.6674,FALSE,9,0.193783525020888,9,0.99961281189186,9,0.322680675891498,"00_11242T1"
"rs2041318",0,0,0,57625292,126652199,5,121,2,0.891,1,0.8323,FALSE,10,0.126062170080585,10,0.9997133021412,10,0.34217918778308,"00_11242T1"
"rs1053110",0,0,0,126652200,90354277,5,93,2,1.0506,0,0.7829,FALSE,11,0.156375642874615,11,0.998198995215151,11,0.32193090491761,"00_11242T1"
"rs2021899",0,0,0,90354278,85692795,6,410,2,1.0628,1,0.8398,FALSE,12,0.15435382388065,12,0.99993200438923,12,0.391558862043803,"00_11242T1"
"rs455030",0,0,0,85692796,79407284,7,285,2,1.0871,1,0.8669,FALSE,13,0.132137812936442,13,0.999929485697204,13,0.365504911746432,"00_11242T1"
"rs1433396",0,0,0,79407285,122076407,8,212,2,0.9334,0,0.4804,FALSE,14,0.263530051339396,14,0.999654307577374,14,0.379065459942171,"00_11242T1"
"rs755520",0,0,0,122076408,129448086,8,15,2,1.4429,0,0.4941,FALSE,15,0.149143991344688,15,0.914078743250954,15,0.425801584614172,"00_11242T1"
"rs1735173",0,0,0,129448087,73161466,8,33,2,0.9364,0,0.4316,FALSE,16,0.278273609876866,16,0.996653200437299,16,0.348280535013844,"00_11242T1"
"rs2026349",0,0,0,73161467,66782116,9,71,2,1.1968,1,0.8239,FALSE,17,0.189895617817744,17,0.999776858536029,17,0.330063332737979,"00_11242T1"
"rs735107",0,0,0,66782117,130050087,9,117,2,0.9506,1,0.8461,FALSE,18,0.141861258733706,18,0.999894912286988,18,0.388093547266615,"00_11242T1"
"rs766374",0,0,0,130050088,68176968,9,17,2,1.0932,1,0.8713,FALSE,19,0.0910714792585353,19,0.997719201852223,19,0.262649566352474,"00_11242T1"
"rs880340",0,0,0,68176969,67402459,10,248,2,1.068,0,0.4195,FALSE,20,0.269922761074577,20,0.999527729786447,20,0.202235805019638,"00_11242T1"
"rs4430531",0,0,0,67402460,67321605,11,229,2,1.1385,1,0.8932,FALSE,21,0.123084967048419,21,0.999592791631743,21,0.294549103735107,"00_11242T1"
"rs7960480",0,0,0,67321606,74655759,12,285,2,1.0545,1,0.8229,FALSE,22,0.122983123511285,22,0.999569526493407,22,0.206346438819543,"00_11242T1"
"rs14067",0,0,0,74655760,65198000,13,187,2,1.1479,1,0.8936,FALSE,23,0.118977461806947,23,0.999132908666796,23,0.190531237977798,"00_11242T1"
"rs1989749",0,0,0,65198001,62810767,14,210,2,0.9512,0,0.5011,FALSE,24,0.243205200245574,24,0.999570632007492,24,0.22779081826097,"00_11242T1"
"rs1192113",0,0,0,62810768,49992524,15,201,2,0.9459,0,0.5006,FALSE,25,0.242235554332421,25,0.999923600003544,25,0.238224514088702,"00_11242T1"
"rs869048",0,0,0,49992525,44973166,16,197,2,1.14,1,0.8493,FALSE,26,0.113266709360598,26,0.999410137369512,26,0.26464683057347,"00_11242T1"
"rs3785513",0,0,0,44973167,40857471,17,159,2,1.0119,0,0.4846,FALSE,27,0.247823361318723,27,0.999773260918777,27,0.286682489405067,"00_11242T1"
"rs420905",0,0,0,40857472,9614641,18,22,2,0.8881,0,0.7783,FALSE,28,0.143466524230892,28,0.989549332985043,28,0.231069902005914,"00_11242T1"
"rs1805272",0,0,0,9614642,38052783,18,148,2,0.8881,0,0.5326,FALSE,29,0.223315888643138,29,0.998876808487203,29,0.259360520111394,"00_11242T1"
"rs3499",0,0,0,38052784,31952708,19,149,2,1.0146,0,0.4964,FALSE,30,0.234643478722549,30,0.999581141159297,30,0.363558042382673,"00_11242T1"
"rs912239",0,0,0,31952709,39291277,20,130,2,1.1629,1,0.891,FALSE,31,0.141976210855505,31,0.999162417982582,31,0.210798912384771,"00_11242T1"
"rs2839377",0,0,0,39291278,31199103,21,103,2,0.9569,0,0.5286,FALSE,32,0.234526243870833,32,0.999309316327552,32,0.181242989596378,"00_11242T1"
"rs10451",0,0,0,31199104,26461186,22,121,2,0.9089,0,0.4561,FALSE,33,0.261911141225885,33,0.999345284476758,33,0.438063878776732,"00_11242T1"
"rs6780",0,0,0,26461187,70501188,98,125,2,1.1575,1,0.9065,FALSE,34,0.132476526665054,34,0.999987049231316,34,0.264264297319435,"00_11242T1"
"rs2032438",0,0,0,70501189,76057512,98,179,2,1.0443,1,0.8159,FALSE,35,0.128901714920779,35,0.999765208281892,35,0.254382011767866,"00_11242T1"
"rs31185",0,0,0,76057513,23098508,99,18,2,0.9412,-4,NA,FALSE,36,0.228356984022432,36,0.993785747186676,36,0.464863253679381,"00_11242T1"
삭제하겠습니다. ;-). 귀하의 의견은 내 대답 앞에 왔습니다. – A5C1D2H2I1M1N2O1R2T1
@James 내가 write.csv에서 그것을 변경하면 im은 추가하려는 행 이름을 잃거나이를 피할 수있는 방법이 있습니까? 다른 데이터를 많이 추가하고 있는데 행 이름이 있어야합니다. – Sanshine
정확히 무엇을하고 있는지 보여줄 수 있습니까? 그 동안'sdint [[1]]을 사용하면 도움이 될 것입니다. – James