R : rJava가 Mac OSX 10.8.5에서 설치되지 않습니다. 'lzma library missing'및 'libjri.jnilib make error'

Question

install.packages("rJava")을 사용하여 rJava를 설치할 때 몇 가지 오류가 발생합니다.

lm-mb:~ lisa$ R 

R Under development (unstable) (2013-11-21 r64282) -- "Unsuffered Consequences" 
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Platform: x86_64-apple-darwin10.8.0 (64-bit) 

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> install.packages("rJava") 
--- Please select a CRAN mirror for use in this session --- 
trying URL 'http://www.stats.bris.ac.uk/R/src/contrib/rJava_0.9-4.tar.gz' 
Content type 'application/x-gzip' length 498108 bytes (486 Kb) 
opened URL 
================================================== 
downloaded 486 Kb 

* installing *source* package ‘rJava’ ... 
** package ‘rJava’ successfully unpacked and MD5 sums checked 
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99 
checking for C compiler default output file name... a.out 
checking whether the C compiler works... yes 
checking whether we are cross compiling... no 
checking for suffix of executables... 
checking for suffix of object files... o 
checking whether we are using the GNU C compiler... yes 
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes 
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none  needed 
checking how to run the C preprocessor... llvm-gcc-4.2 -arch x86_64 -std=gnu99 -E 
checking for grep that handles long lines and -e... /usr/bin/grep 
checking for egrep... /usr/bin/grep -E 
checking for ANSI C header files... yes 
checking for sys/wait.h that is POSIX.1 compatible... yes 
checking for sys/types.h... yes 
checking for sys/stat.h... yes 
checking for stdlib.h... yes 
checking for string.h... yes 
checking for memory.h... yes 
checking for strings.h... yes 
checking for inttypes.h... yes 
checking for stdint.h... yes 
checking for unistd.h... yes 
checking for string.h... (cached) yes 
checking sys/time.h usability... yes 
checking sys/time.h presence... yes 
checking for sys/time.h... yes 
checking for unistd.h... (cached) yes 
checking for an ANSI C-conforming const... yes 
checking whether time.h and sys/time.h may both be included... yes 
configure: checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 supports static  inline... 
yes 
checking whether setjmp.h is POSIX.1 compatible... yes 
checking whether sigsetjmp is declared... yes 
checking whether siglongjmp is declared... yes 
checking Java support in R... present: 
interpreter : '/usr/bin/java' 
archiver : '/usr/bin/jar' 
compiler : '/usr/bin/javac' 
header prep.: '/usr/bin/javah' 
cpp flags : '-I/System/Library/Frameworks/JavaVM.framework/Headers' 
java libs : '-framework JavaVM' 
checking whether JNI programs can be compiled... yes 
checking JNI data types... ok 
checking whether JRI should be compiled (autodetect)... yes 
checking whether debugging output should be enabled... no 
checking whether memory profiling is desired... no 
checking whether threads support is requested... no 
checking whether callbacks support is requested... no 
checking whether JNI cache support is requested... no 
checking whether JRI is requested... yes 
configure: creating ./config.status 
config.status: creating src/Makevars 
config.status: creating R/zzz.R 
config.status: creating src/config.h 
=== configuring in jri  (/private/var/folders/dn/lvhnwvq15n37bdh0dqm033zh0000gp/T/RtmpuD563L/R.INSTALL158732c239a6c/rJava/jri) 
configure: running /bin/sh ./configure '--prefix=/usr/local' --cache-file=/dev/null -- srcdir=. 
checking build system type... i386-apple-darwin12.5.0 
checking host system type... i386-apple-darwin12.5.0 
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99 
checking for C compiler default output file name... a.out 
checking whether the C compiler works... yes 
checking whether we are cross compiling... no 
checking for suffix of executables... 
checking for suffix of object files... o 
checking whether we are using the GNU C compiler... yes 
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes 
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed 
checking how to run the C preprocessor... llvm-gcc-4.2 -arch x86_64 -std=gnu99 -E 
checking for grep that handles long lines and -e... /usr/bin/grep 
checking for egrep... /usr/bin/grep -E 
checking for ANSI C header files... rm: conftest.dSYM: is a directory 
rm: conftest.dSYM: is a directory 
yes 
checking whether Java interpreter works... checking whether JNI programs can be  compiled... yes 
checking whether JNI programs can be run... yes 
checking JNI data types... ok 
checking whether Rinterface.h exports R_CStackXXX variables... yes 
checking whether Rinterface.h exports R_SignalHandlers... yes 
configure: creating ./config.status 
config.status: creating src/Makefile 
config.status: creating Makefile 
config.status: creating run 
config.status: creating src/config.h 
** libs 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Rglue.c -o Rglue.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c arrayc.c -o arrayc.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c callJNI.c -o callJNI.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c callback.c -o callback.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c fields.c -o fields.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c init.c -o init.o 
init.c: In function ‘initJVM’: 
init.c:100: warning: ‘JNI_GetDefaultJavaVMInitArgs’ is deprecated (declared at  /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1934) 
init.c:139: warning: ‘JNI_CreateJavaVM’ is deprecated (declared at /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1937) 
init.c: In function ‘RinitJVM’: 
init.c:278: warning: ‘JNI_GetCreatedJavaVMs’ is deprecated (declared at /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940) 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c jri_glue.c -o jri_glue.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c loader.c -o loader.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c otables.c -o otables.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rJava.c -o rJava.o 
rJava.c: In function ‘getJNIEnv’: 
rJava.c:200: warning: ‘JNI_GetCreatedJavaVMs’ is deprecated (declared at /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940) 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c tools.c -o tools.o 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -framework JavaVM -F/Library/Frameworks/R.framework/.. - framework R -Wl,-framework -Wl,CoreFoundation 
(cd ../jri && make) 
make -C src JRI.jar 
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java    ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java  ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java 
/usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o Rengine.o Rengine.c -g -Iinclude - DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 - I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include 
Rcallbacks.c: In function ‘checkEnvironment’: 
Rcallbacks.c:46: warning: ‘JNI_GetCreatedJavaVMs’ is deprecated (declared at /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940) 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -mtune=core2 -g -O2 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers 
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -dynamiclib -framework JavaVM -F/Library/Frameworks/R.framework/.. -framework R -llzma -licucore -lm -liconv 
ld: library not found for -llzma 
collect2: ld returned 1 exit status 
make[2]: *** [libjri.jnilib] Error 1 
make[1]: *** [src/JRI.jar] Error 2 
make: *** [jri] Error 2 
ERROR: compilation failed for package ‘rJava’ 
* removing ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/rJava’ 

The downloaded source packages are in 
    ‘/private/var/folders/dn/lvhnwvq15n37bdh0dqm033zh0000gp/T/Rtmp5B1vEJ/downloaded_packages’ 
Warning message: 
In install.packages("rJava") : 
    installation of package ‘rJava’ had non-zero exit status 

처음에는 lzma과 관련된 라이브러리가 누락되었다고보고되었습니다. 검색 좀이 라이브러리는 liblzma, XY 파일 압축과 관련이 있다니? XZ Compression Tukaani 이것이 맞다면 어디에서이 라이브러리를 얻을 수 있습니까?

빌드 할 때 다른 오류가 발생하는 이유는 무엇입니까? 나는 그들이 나의 자바 환경과 관련이 있다고 추측하고 있는가?

make[2]: *** [libjri.jnilib] Error 1 
make[1]: *** [src/JRI.jar] Error 2 
make: *** [jri] Error 2 

Java 버전을 업데이트했으며 최신 버전을 실행 중입니다.

lm-mb:~ lisa$ java -version 
java version "1.7.0_45" 
Java(TM) SE Runtime Environment (build 1.7.0_45-b18) 
Java HotSpot(TM) 64-Bit Server VM (build 24.45-b08, mixed mode) 

는 또한 libjdns_sd.jnilib도 나는 또한 R: rJava package install failing

export JAVA_HOME=$/Library/Java/JavaVirtualMachines/jdk1.7.0_45.jdk/Contents/Home/jre 
export JAVA_HOME 

export PATH=$PATH:$JAVA_HOME/bin 
export PATH 

크게 도움을 주셔서 감사합니다겠습니까이 게시물에 따라 내 JAVA_HOME 환경을 설정 한

lm-mb:jre lisa$ ls /usr/lib/java/ 
libjdns_sd.jnilib 

을 찾을 것을 알 수있다. (14.04 테스트) 리눅스 사용자의 경우

Answer 1

희망이 도움 누락 된 LZMA 라이브러리를 installting하여 해결하고 그래서 같은 맥 바이너리 버전을 설치하여 그것을 통해 가지고 같다 :

install.packages("rJava", type="mac.binary") 

당신이 정말 LZMA 라이브러리를 사용해야하는 경우 당신은 MacPorts를 통해 설치를 운이 있습니다

sudo port install lzma 

OS X 10.6.8 (Snow Leopard)입니다.

Answer 2

:

나는 비슷한 문제를 가지고,하지만 내 환경에서, 내가 자바 1.6를 사용합니다. 나는

sudo apt-get install liblzma-dev 

이 사람 :) 건배에게 저도 같은 문제로 실행